k_means: Order the entries in each matrix according to the order...
In ClaudiaRHD/chipAnalyser: R package for rapid ChIP-seq data analysis and visualisation.
Description
Usage
Arguments
Value
Description
Clusters data of selected matrix in the list in k clusters. Order the entries of all matrices according to the ordered reference matrix. Called by "plot_hm"-function.
Usage
1
Arguments
mat
A list with matrices and additional information about the selected region. mat generated by "get_matrix"-function. Default value is NULL.
refmat
Integer which specifies the reference matrix to which all matrices will be ordered according to kmeans clustering of ference matrix. Default value is NULL.
k
Integer which specifies the number of clusters which should be build by "kmeans"-function. Default value is NULL.
Value
list with ordered matrix entries, splitted matrices according to the clusters with column Means for profile plotting and additional information about the clusters and the region entered in "get_matrix"-function. Will be used of "plot_hm"-function
ClaudiaRHD/chipAnalyser documentation built on June 18, 2020, 8:31 p.m.
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Description Usage Arguments Value
Description
Clusters data of selected matrix in the list in k clusters. Order the entries of all matrices according to the ordered reference matrix. Called by "plot_hm"-function.
Usage
1 |
Arguments
mat |
A list with matrices and additional information about the selected region. mat generated by "get_matrix"-function. Default value is NULL. |
refmat |
Integer which specifies the reference matrix to which all matrices will be ordered according to kmeans clustering of ference matrix. Default value is NULL. |
k |
Integer which specifies the number of clusters which should be build by "kmeans"-function. Default value is NULL. |
Value
list with ordered matrix entries, splitted matrices according to the clusters with column Means for profile plotting and additional information about the clusters and the region entered in "get_matrix"-function. Will be used of "plot_hm"-function
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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