summarize: Calculates mean or median for every region in a bed file.

In ClaudiaRHD/chipAnalyser: R package for rapid ChIP-seq data analysis and visualisation.

Description

Calculates mean or median for every region in a bed file. Takes output of "get_matrix" function as mat_list. Returns list for every inserted bigWig file with the mean or median value for every region according to the adjustments made in "get_matrix" function.

Usage

summarize(mat_list, opt = "mean")

Arguments

mat_list	A list with average values of region around a peak. Output of "get_matrix" function. Default value is NULL.
opt	Option how the values of mat_list should be summarized. Possible options are 'mean' or 'median'. Default value is mean.

ClaudiaRHD/chipAnalyser documentation built on June 18, 2020, 8:31 p.m.