plot_hm: Plot a heatmap of ordered (and clustered) data in mat.
In ClaudiaRHD/chipAnalyser: R package for rapid ChIP-seq data analysis and visualisation.
Description
Takes entered list with matrices and passes it to "tidy_mat"-function and then to the functions "get_avg", "get_xavg" or "k_means" according to the entered values for clusterBy and k_num. Matrices will be ordered and then plotted with base graphics.
Usage
1
Arguments
mat
A list with matrices and additional information about the selected region. mat generated by "get_matrix"-function. Default value is NULL.
clusterBy
Integer which specifies the matrix to which all matrices will be ordered. Default value is 'avg'.
num_k
Integer which specifies the number of clusters which should be build by "kmeans"-function. Default value is NULL.
ClaudiaRHD/chipAnalyser documentation built on June 18, 2020, 8:31 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Takes entered list with matrices and passes it to "tidy_mat"-function and then to the functions "get_avg", "get_xavg" or "k_means" according to the entered values for clusterBy and k_num. Matrices will be ordered and then plotted with base graphics.
Usage
1 |
Arguments
mat |
A list with matrices and additional information about the selected region. mat generated by "get_matrix"-function. Default value is NULL. |
clusterBy |
Integer which specifies the matrix to which all matrices will be ordered. Default value is 'avg'. |
num_k |
Integer which specifies the number of clusters which should be build by "kmeans"-function. Default value is NULL. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.