Description Usage Arguments Value
Create a matrix with extracted data from bigWig files. Region around peak which should be observed can be specified. Returns a list with the matrix and the inserted parameters (region, binsize, reference position) and filenames (bed file andbigWig files).
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bed |
A file in bed format. Default value is NULL. |
bw_files |
One or a character vector with multiple files in bigWig format. Default value is NULL. |
bw_path |
The path to directory where bwtool is installed on the computer. Default value is NULL. |
op_dir |
The path to the operation directory currently used. Default value is NULL. |
up |
Number of basepairs from peak to 5' end. Default value is 2500. |
down |
Number of basepairs from peak to 3' end.Default value is 2500. |
pos |
Reference position of the region around a peak. Possibilities: '-starts' and '-ends'. Default value is ” and means a centered reference position. |
binsize |
Binsize of how many basepairs the avergae will be calculated. Default value is 25. |
numcores |
Number of cores which should be used in parallelised process.Default value is NULL and will be defined as the number of available cores - 1. |
result list with matrices and additional information about the input of the function
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