Man pages for Close-your-eyes/fcexpr
Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way
| ab_info_to_panel | Complement the antibody panel table with additional... |
| ab_panel_to_fcs | Write antibody related information into a fcs file |
| col_pal | Color palettes |
| compMat_neutral_to_fcs | Make an existing compensation matrix in a FCS neutral |
| compMat_to_fcs | Write a compensation matrix into a fcs file |
| dr_to_fcs | Calculate dimension reduction and cluster annotation with... |
| dr_to_fcs2 | Calculate dimension reduction and cluster annotation with... |
| fcs_get_keywords | Obtain keywords from a FCS file |
| fcs_get_voltages | Obtain PMT-voltages from a FCS file |
| gating_tree_plot | Plot gating tree as a graph to explore how populations are... |
| geo_mean | Geometric mean |
| gs_get_gates | Gates from gatingset for plotting with ggcyto |
| inds_get_ff | Get (subsetted) flowFrames from FCS files |
| int_breaks | Make axis labels that are numeric but should only integer... |
| match_fcs_and_wsp | Find out in which FlowJo workspaces FCS files have been... |
| new_exp | Create a template folder for flow cytometry experiments |
| nPE_to_fcs | Convert fluorescence intensity (FI) to number of detected... |
| pca_to_fcs | Add principle components (PCs) to FCS file |
| plot_gates | Plot a default layout of gated populations of a set of FCS... |
| read.FCS_comma | A modified version of flowCores read.FCS |
| sampledescription_to_fcs_keywords | Write columns from sampledescription as keyword into FCS... |
| sci10 | Make appealing axis labels for log axis |
| sort_num_chr | Sort numerical character according to the numbers that the... |
| split_flowjo_export_image | Split a flowjo export of multiple plots into separate... |
| split_mat | Split matrices just like splitting a data frame. |
| sync_sampledescription | Synchronize a meta data table (sampledescription) with FCS... |
| wsp_get_ff | Get (subsetted) flowFrames from one or many flowjo workspaces |
| wsp_get_gs | Get (subsetted) gatingsets from flowjo workspaces |
| wsp_get_indices | Get indices for all gated populations in a flowjo workspace |
| wsx_compMats_to_fcs | Write the compensation matrices generated in a flowjo... |
| wsx_get_fcs_paths | Get file paths to the fcs files in a workspace |
| wsx_get_gate_definitions | Obtain geometric gate definitions (coordinates) from flowjo... |
| wsx_get_groups | Retrieve groups within a flowjo workspace and associated... |
| wsx_get_keywords | Get keywords from a flowjo workspace |
| wsx_get_poppaths | Obtain paths to populations/nodes/gates in a flowjo workspace |
| wsx_get_popstats | Import data from a wsp file |
| wsx_get_popstats2 | Import data from a wsp file |
| wsx_get_transformations | Get transformation parameters from a flowjo workspace |
