wsx_get_poppaths: Obtain paths to populations/nodes/gates in a flowjo workspace

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Obtain paths to populations/nodes/gates in a flowjo workspace

Description

Obtain paths to populations/nodes/gates in a flowjo workspace

Usage

wsx_get_poppaths(ws, groups = NULL, collapse = T)

Arguments

ws	path to flowjo workspace or a parsed xml-document (xml2::read_xml(ws))
groups	which groups in from flowjo workspace to consider
collapse	logical whether to collapse FileNames to a list column

Value

data frame

Examples

## Not run: 
pp <- wsx_get_poppaths(ws, collapse = F)
# check which files have equal gating trees
# and get the node (or path, or population) names
pp <- pp %>%
dplyr::group_by(PopulationFullPath, Population, ws) %>%
dplyr::summarise(FileName = list(FileName), .groups = "drop")

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.