wsx_get_transformations: Get transformation parameters from a flowjo workspace

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Get transformation parameters from a flowjo workspace

Description

Get transformation parameters from a flowjo workspace

Usage

wsx_get_transformations(
  ws,
  lapply_fun = lapply,
  groups = NULL,
  group_filenames = F,
  ...
)

Arguments

ws	path to flowjo workspace or a parsed xml-document (xml2::read_xml(ws))
lapply_fun	function name without quotes; lapply, pbapply::pblapply or parallel::mclapply are suggested
groups	which flowjo groups to include
group_filenames	create a list column of filenames that have equal transformation pararmeters
...	additional argument to the lapply function; mainly mc.cores when parallel::mclapply is chosen

Value

data frame with transformation parameters for each channel

Examples

## Not run: 
trafo_df <- wsx_get_transformations(ws = ws)

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.