match_fcs_and_wsp: Find out in which FlowJo workspaces FCS files have been...

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Find out in which FlowJo workspaces FCS files have been analyzed.

Description

Find out in which FlowJo workspaces FCS files have been analyzed.

Usage

match_fcs_and_wsp(
  FCS.file.folder = NULL,
  FCS.file.paths = NULL,
  exclude.folders = NULL,
  wsp
)

Arguments

FCS.file.folder	one or more absolute paths to folder containing FCS files; will be scanned for .fcs files recursively (subfolder as well)
FCS.file.paths	absolute paths to to FCS files
exclude.folders	folders to exclude; if any of these strings appears in the absolute path to a fcs file this file will be excluded
wsp	one or more absolute paths to flowjo workspaces on disk

Value

a data.frame of matched (joined) information about fcs files on disk and fcs files referred to in flowjo workspaced

Examples

## Not run: 
match_fcs_and_wsp(FCS.file.folder = file.path(wd, "FCS_files"), ws = "mypath/my.wsp")

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.