wsx_get_fcs_paths: Get file paths to the fcs files in a workspace

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Get file paths to the fcs files in a workspace

Description

If one has a large experiment with many fcs files and many workspaces with various gatings, finding out which fcs files are gated in which workspace may be helpful.

Usage

wsx_get_fcs_paths(ws, split = T)

Arguments

ws	path to flowjo workspace or a parsed xml-document (xml2::read_xml(ws))
split	logical whether to split file paths by groups; if yes a list is returned, if no a data frame

Value

a list or data frame of paths to fcs files

Examples

## Not run: 
wsx_get_fcs_paths(ws)

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.