wsx_get_groups: Retrieve groups within a flowjo workspace and associated...

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Retrieve groups within a flowjo workspace and associated samples (sampleID)

Description

Retrieve groups within a flowjo workspace and associated samples (sampleID)

Usage

wsx_get_groups(
  ws,
  filter_AllSamples = T,
  collapse_groups = T,
  collapse_to = "list"
)

Arguments

ws	path to flowjo workspace or a parsed xml-document (xml2::read_xml(ws))
filter_AllSamples	logical whether to filter the All Samples Group in case the fcs file is also part of another group
collapse_groups	logical whether to collapse multiple group-belongings of samples into a list-column in the data frame
collapse_to	string how to collapse groups; to collapse to a list-column pass 'list'; to collapse to a string provide any separator string like ';', ',' or '-'

Value

a data frame

Examples

## Not run: 
wsx_get_groups(ws)

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.