sampledescription_to_fcs_keywords: Write columns from sampledescription as keyword into FCS...

In Close-your-eyes/fcexpr: Complement the manual analysis of flow cytometric experiments and organize your fcs files in a consistent way

Write columns from sampledescription as keyword into FCS files

Description

Given a sampledescription with annotation of fcs files such meta data may be written as keyword into respective fcs files.

Usage

sampledescription_to_fcs_keywords(sampledescription, columns, FCS.file.folder)

Arguments

sampledescription	data frame
columns	vector of column names from sampledescription to write as keywords
FCS.file.folder	path to folder of FCS files

Value

no return but keywords written to FCS files

Examples

## Not run: 
wd <- dirname(dirname(rstudioapi::getActiveDocumentContext()$path))
sd <- openxlsx::read.xlsx(file.path(wd, sampledescription.xlsx))
# if only a subset of files should be considered, select respective rows
sampledescription_to_fcs_keywords(sampledescription = sd, columns = c("Patient", "ExpPart"), FCS.file.folder = file.path(wd, "FCS_files"))

## End(Not run)

Close-your-eyes/fcexpr documentation built on Sept. 29, 2023, 12:27 a.m.