plotPatternGeneSet-methods: generate a barchart of most significant hallmark sets for a...
In CoGAPS/CoGAPS: Coordinated Gene Activity in Pattern Sets
plotPatternGeneSet R Documentation
generate a barchart of most significant hallmark sets for a pattern
Description
generate a barchart of most significant hallmark sets for a pattern
Usage
plotPatternGeneSet(patterngeneset, whichpattern = 1, padj_threshold = 0.05)
## S4 method for signature 'list,numeric,numeric'
plotPatternGeneSet(patterngeneset, whichpattern = 1, padj_threshold = 0.05)
Arguments
patterngeneset
output from getPatternGeneSet
whichpattern
which pattern to generate bar chart for
padj_threshold
maximum adjusted p-value of gene sets rendered on the resulting plot
Value
image object of barchart
CoGAPS/CoGAPS documentation built on May 2, 2024, 5:24 p.m.
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| plotPatternGeneSet | R Documentation |
generate a barchart of most significant hallmark sets for a pattern
Description
generate a barchart of most significant hallmark sets for a pattern
Usage
plotPatternGeneSet(patterngeneset, whichpattern = 1, padj_threshold = 0.05)
## S4 method for signature 'list,numeric,numeric'
plotPatternGeneSet(patterngeneset, whichpattern = 1, padj_threshold = 0.05)
Arguments
patterngeneset |
output from getPatternGeneSet |
whichpattern |
which pattern to generate bar chart for |
padj_threshold |
maximum adjusted p-value of gene sets rendered on the resulting plot |
Value
image object of barchart
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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