API for Coayala/MetaboTandem
Analysis and Visualization of LC-MS/MS Data

Global functions
%>% Man page
add_canopus Man page Source code
annotate_with_sirius Source code
app_header Source code
app_server Source code
app_sys Source code
app_ui Source code
apply_alignment Man page Source code
apply_alignment.lama Man page Source code
apply_alignment.ow Man page Source code
apply_alignment.pg Man page Source code
apply_cleaning Source code
apply_correspondence Man page Source code
apply_correspondence.np Man page Source code
apply_correspondence.pd Man page Source code
apply_gap_filling Man page Source code
apply_normalization Man page Source code
apply_peak_picking Man page Source code
apply_peak_picking.cw Man page Source code
apply_peak_picking.mf Man page Source code
apply_peak_picking.mq Man page Source code
apply_peak_refinement Man page Source code
apply_prevalence_filtering Man page Source code
apply_variance_filtering Man page Source code
back_button Source code
calculate_clustering Man page Source code
calculate_ordination Man page Source code
calculate_permanova Man page Source code
centroid_check Man page Source code
check_model Man page
col_1 Source code
col_10 Source code
col_12 Source code
col_2 Source code
col_3 Source code
col_4 Source code
col_6 Source code
col_8 Source code
col_9 Source code
colored_text Source code
colorpicker_factory Source code
cycloess_norm Man page Source code
differential_analysis Man page Source code
display Source code
drop_nulls Source code
enurl Source code
extract.biplot.pcoa Source code
extract_abundance_table Man page Source code
extract_autotuner Man page Source code
extract_feature_chromatograms Man page Source code
extract_feature_definitions Man page Source code
extract_feature_spectra Man page Source code
fit_model Man page
fit_model.lm Man page
fit_model.lme Man page
get_annotation_tables Man page Source code
get_golem_config Source code
get_molecular_class Man page Source code
get_ms2_matches Source code
global_norm Man page Source code
golem_add_external_resources Source code
headerbox_factory Source code
home_ui Source code
iqr_filtering Man page Source code
jq_hide Source code
list_to_li Source code
list_to_p Source code
load_dataframe Man page Source code
load_metadata Man page Source code
load_ms1_db Source code
load_ms2_db Source code
load_spectra_data Man page Source code
mad_filtering Man page Source code
make_action_button Source code
max_norm Man page Source code
mean_norm Man page Source code
median_norm Man page Source code
merge_annotation_tables Man page Source code
mod_alignment_server Source code
mod_alignment_ui Source code
mod_annotation_server Source code
mod_annotation_ui Source code
mod_load_data_server Source code
mod_load_data_sub_metadata_server Source code
mod_load_data_sub_metadata_ui Source code
mod_load_data_sub_spectra_server Source code
mod_load_data_sub_spectra_ui Source code
mod_load_data_ui Source code
mod_main_pipeline_ui Source code
mod_peak_picking_server Source code
mod_peak_picking_ui Source code
mod_postprocessing_server Source code
mod_postprocessing_ui Source code
mod_stats_multi_server Source code
mod_stats_multi_ui Source code
mod_stats_setup_server Source code
mod_stats_setup_ui Source code
mod_stats_univ_server Source code
mod_stats_univ_ui Source code
named_to_li Source code
next_button Source code
nmds_ordination Man page Source code
numpicker_factory Source code
other_arrow_button Source code
pca_ordination Man page Source code
pcoa_ordination Man page Source code
plot_da_sig_features Man page Source code
plot_mirror Man page Source code
plot_model_sig_features Man page
plot_ordination Man page Source code
plot_ordination.nmds Man page Source code
plot_ordination.pca Man page Source code
plot_ordination.pcoa Man page Source code
plot_volcano Man page Source code
rep_br Source code
rsd_filtering Man page Source code
run_app Man page Source code
rv Source code
rvtl Source code
sd_filtering Man page Source code
start_autotuner Man page Source code
tagRemoveAttributes Source code
test_contrasts Man page
test_peak_picking Man page Source code
undisplay Source code
vsn_norm Man page Source code
with_red_star Source code
Coayala/MetaboTandem documentation built on June 9, 2025, 9:02 p.m.