API for Coayala/MetaboTandem
Pipeline for the analysis of LC-MS/MS data

Global functions
%>% Man page
MetaboTandem Man page
MetaboTandem-package Man page
MetaboTandemApp Man page Source code
alignSpectraServer Source code
alignSpectraUI Man page Source code
annotate_CAMERA Man page Source code
annotate_SIRIUS Man page
annotationappUI Man page Source code
app_header Source code
apply_alignment Man page Source code
apply_correspondence Man page Source code
apply_gap_filling Man page Source code
apply_peak_picking Man page Source code
apply_peak_refinement Man page Source code
autotunerServer Source code
autotunerUI Man page Source code
calculate_bpc Man page Source code
calculate_permanova Source code
calculate_tic Man page Source code
centroid_check Man page Source code
colorPickerServer Source code
colorPickerUI Man page Source code
create_col_vector Man page Source code
create_gnps_db Man page
create_massbank_db Man page Source code
create_mona_db Man page
cycloess.norm Man page Source code
dbAnnotationServer Man page Source code
dbAnnotationUI Man page Source code
diffExpressionServer Source code
diffExpressionUI Man page Source code
download_ResultspreprocServer Source code
download_ResultspreprocUI Man page Source code
extract_MS2_consensus Man page Source code
extract_autotuner Man page Source code
extract_feature_definition Man page Source code
extract_features Man page Source code
extract_number_peaks Man page Source code
extract_spectra_table Man page Source code
fix_entries Man page Source code
formatSpectraForGNPS Source code
gapFillingServer Source code
gapFillingUI Man page Source code
get_diff_table Source code
get_samples Source code
global.norm Man page Source code
headerbox_factory Source code
home_ui Man page
identify_peak Man page Source code
load_dataServer Man page Source code
load_dataUI Man page Source code
load_spectra_data Man page Source code
max.norm Man page Source code
mean.norm Man page Source code
median.norm Man page Source code
merge_SIRIUS_files Man page Source code
metIdentification Source code
metadataServer Man page Source code
metadataUI Man page Source code
mod_get_identification_table Man page Source code
mod_identify_all Man page
mod_metIdentify Man page Source code
mod_writeMgfContent Source code
mod_writeMgfDataFile Source code
multivariateServer Source code
multivariateUI Man page Source code
nmds_ordination Man page Source code
norm_methods_all Man page Source code
normalize_by_all Man page Source code
old_MetaboTandemApp Man page Source code
parse_ms2_for_SIRIUS Man page Source code
pca_ordination Source code
peakPickingServer Man page Source code
peakPickingUI Man page Source code
plotMS2match Source code
plot_boxplot Source code
plot_volcano Source code
read_mgf Man page Source code
read_msp Man page
rp_data Man page
separate_MS2 Man page Source code
siriusAnnotationServer Man page Source code
siriusAnnotationUI Man page Source code
spectraServer Man page Source code
spectraUI Man page Source code
start_autotuner Man page Source code
stastSetupServer Source code
statsSetupUI Man page Source code
summaryServer Source code
summaryUI Source code
test_peak_picking Man page Source code
ui_main Man page Source code
vsn.norm Man page Source code
Coayala/MetaboTandem documentation built on April 7, 2024, 3:39 a.m.