calculate_permanova: Multivariate analysis - PERMANOVA

In Coayala/MetaboTandem: Analysis and Visualization of LC-MS/MS Data

Multivariate analysis - PERMANOVA

Description

Function to perform a permutational analysis of variance

Usage

calculate_permanova(
  abun_table,
  metadata,
  vars,
  distance = "bray",
  assess = "model",
  use_interaction = FALSE,
  strata = NULL
)

Arguments

abun_table	Feature abundance table with features as rows and samples as columns
vars	Independent variables
distance	Dissimilarity distance to calculate. Available options are those from vegan::vegdist()
use_interaction	Calculate interaction of selected variables
strata	Variable to define sample blocks

Value

Object returned depend on the selected method

Coayala/MetaboTandem documentation built on June 9, 2025, 9:02 p.m.