ordination_methods: Multivariate analysis - Ordination
In Coayala/MetaboTandem: Analysis and Visualization of LC-MS/MS Data
calculate_ordination R Documentation
Multivariate analysis - Ordination
Description
Function to calculate ordination with different methods
Usage
calculate_ordination(abun_table, method, distance = "bray", group = NULL)
nmds_ordination(abun_table, distance)
pca_ordination(abun_table)
pcoa_ordination(abun_table, distance)
Arguments
abun_table
Feature abundance table
method
Ordination method
distance
Dissimilarity distance to calculate. Available options are
those from vegan::vegdist()
Value
Object returned depend on the selected method
Coayala/MetaboTandem documentation built on June 9, 2025, 9:02 p.m.
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| calculate_ordination | R Documentation |
Multivariate analysis - Ordination
Description
Function to calculate ordination with different methods
Usage
calculate_ordination(abun_table, method, distance = "bray", group = NULL)
nmds_ordination(abun_table, distance)
pca_ordination(abun_table)
pcoa_ordination(abun_table, distance)
Arguments
abun_table |
Feature abundance table |
method |
Ordination method |
distance |
Dissimilarity distance to calculate. Available options are
those from |
Value
Object returned depend on the selected method
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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