test_peak_picking: Test peak picking

In Coayala/MetaboTandem: Pipeline for the analysis of LC-MS/MS data

Test peak picking

Description

Function to test peak picking parameters on a data subset

Usage

test_peak_picking(
  data,
  mz_range,
  rt_range,
  p_width,
  snt,
  noise,
  prefilter = c(1, 100)
)

Arguments

data	An MSnExp object in centroid mode.
snt	Minimum signal-to-noise threshold allowed
noise	Noise threshold
prefilter	Prefilter step cutoff (c(k, I)). Mass will be retained if they contain at least k peaks with intensity >= I
mz.range	mz range (numeric(2)) to test peak picking parameters.
rt.range	rt range (numeric(2)) to test peak picking parameters.
p.width	Minium and maximum allowed peak width

Coayala/MetaboTandem documentation built on April 7, 2024, 3:39 a.m.