MS data

alignSpectraUI	Align spectra UI
annotate_CAMERA	Adduct annotation with CAMERA
annotate_SIRIUS	Annotate MS2 using SIRIUS
annotationappUI	Solo annotation UI '
apply_alignment	Apply Peak alignment
apply_correspondence	Apply Peak Correspondence
apply_gap_filling	Apply Gap Filling
apply_peak_picking	Apply Peak Picking
apply_peak_refinement	Apply Peak Refinement
autotunerUI	Autotuner UI '
calculate_bpc	Calculate BPC
calculate_tic	Calculate TIC
centroid_check	Check centroided
colorPickerUI	ColorPickerUI
create_col_vector	Create color vectors
create_gnps_db	Create GNPS annotation database
create_massbank_db	Create massbank annotation database
create_mona_db	Create MoNA annotation database
cycloess.norm	Cyclic LOESS normalization
dbAnnotationServer	Database annotation server
dbAnnotationUI	Annotation UI '
diffExpressionUI	Ui for differential expression analysis
download_ResultspreprocUI	Download results (preprocessing) UI
extract_autotuner	Extract parameters AutoTuner
extract_feature_definition	Extract feature definitions
extract_features	Extract features
extract_MS2_consensus	Extract MS2 data
extract_number_peaks	Extract number of peaks
extract_spectra_table	Extract spectra table
fix_entries	Rearrange entries in annotation table
gapFillingUI	Gap fill UI
global.norm	Global are under the curve normalization
home_ui	Homepage UI
identify_peak	Identify metabolites based on MS1 or MS/MS database
load_dataServer	Load data server-side processing
load_dataUI	Load data UI
load_spectra_data	Load Spectra data
max.norm	Max normalization
mean.norm	Mean Normalzation Function to apply global mean normalization...
median.norm	Median Normalization
merge_SIRIUS_files	Merge SIRIUS annotation
MetaboTandemApp	MetaboTandem UI
MetaboTandem-package	MetaboTandem
metadataServer	Metadata uploading server-side processing
metadataUI	Metadata uploading UI
mod_get_identification_table	Modified - Get identification table
mod_identify_all	Modified - Identify metabolites using multiple databases
mod_metIdentify	Modified - Identify metabolites using
multivariateUI	Perform multivariate Analysis
nmds_ordination	Function to calculate NMDS
normalize_by_all	Test normalization methods
norm_methods_all	Function to apply any normalization method required
old_MetaboTandemApp	MetaboTandem UI
parse_ms2_for_SIRIUS	Function to parse ms2 data to work with SIRIUS
peakPickingServer	Peak picking server-side processing
peakPickingUI	Peak picking spectra UI '
pipe	Pipe operator
read_mgf	Read mgf data
read_msp	Read msp data
rp_data	Spectra data for RP LC-MS/MS experiment
separate_MS2	Separate MGF into groups
siriusAnnotationServer	Database annotation server
siriusAnnotationUI	Annotation using SIRIUS UI '
spectraServer	Spectra uploading server-side processing
spectraUI	Spectra uploading UI
start_autotuner	Start autotuner
statsSetupUI	Set options for statistical analysis
test_peak_picking	Test peak picking
ui_main	MetaboTandem UI
vsn.norm	Variance stabilization normalization Function to apply...