krsa_get_diff: Extract differential peptides based on LFC cutoff

In CogDisResLab/KRSA: KRSA: Kinome Random Sampling Analyzer

Extract differential peptides based on LFC cutoff

Description

This function takes in the LFC table, column name, and an LFC cutoff to extracts differentially phosphorylated peptides

Usage

krsa_get_diff(data, col, lfc_thr, sd_thr = Inf)

Arguments

data	LFC table
col	LFC column name
lfc_thr	LFC cutoffs
sd_thr	SD cutoff

Value

peptides

See Also

Other helper functions: enrichr_lib_call(), krsa_ce_output_kinases(), krsa_ce_output_peptides(), krsa_enrichr(), krsa_extractEndPoint(), krsa_extractEndPointMaxExp(), krsa_get_diff_byChip(), krsa_sampling(), krsa_show_peptides(), krsa_top_hits()

Examples

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CogDisResLab/KRSA documentation built on Sept. 27, 2024, 2:03 p.m.