krsa_violin_plot_grouped: Generates grouped violin plots based on peptides signals...

In CogDisResLab/KRSA: KRSA: Kinome Random Sampling Analyzer

Generates grouped violin plots based on peptides signals intensities with t tests options

Description

Takes in the scaled dataset from krsa_scaleModel() and plot violin figures using ggplot2

Usage

krsa_violin_plot_grouped(
  data,
  peptides,
  grp_comp = NULL,
  groups = NULL,
  test = F,
  test_method = "wilcox.test",
  violin = TRUE,
  dots = FALSE,
  lines = FALSE,
  avg_line = T,
  ...
)

Arguments

data	the scaled dataset from krsa_scaleModel
peptides	vector of peptides
grp_comp	list of group comparison names
groups	(optional) a vector of group names
test	perform two group test
test_method	type of test (default is wilcox.test)
violin	add violin layer
dots	add dotplot layer
lines	add lines layer
avg_line	draw averaged line across the two groups
...	arguments passed to ggsignif

Value

ggplot figure

See Also

Other plots: krsa_ball_model(), krsa_coverage_plot(), krsa_curve_plot(), krsa_cv_plot(), krsa_heatmap(), krsa_heatmap_grouped(), krsa_histogram_plot(), krsa_reverse_krsa_plot(), krsa_violin_plot(), krsa_waterfall(), krsa_zscores_plot()

Examples

TRUE

CogDisResLab/KRSA documentation built on Oct. 25, 2024, 9:17 a.m.