krsa_reverse_krsa_plot: Generates the reverse krsa plot (to examine kinase activity)

In CogDisResLab/KRSA: KRSA: Kinome Random Sampling Analyzer

Generates the reverse krsa plot (to examine kinase activity)

Description

This function takes in chipCov df, the LFC table, kinases, LFC threshold, and generates the reverse krsa plot (to examine kinase activity)

Usage

krsa_reverse_krsa_plot(
  chipCov,
  lfc_table,
  kinases,
  lfc_thr,
  byChip = T,
  facet = F
)

Arguments

chipCov	chipCov df for eaither STK or PTK
lfc_table	the LFC table
kinases	vector of kinases
lfc_thr	LFC threshold
byChip	will facet by Barcode
facet	facet by chip

Value

ggplot object

See Also

Other plots: krsa_ball_model(), krsa_coverage_plot(), krsa_curve_plot(), krsa_cv_plot(), krsa_heatmap(), krsa_heatmap_grouped(), krsa_histogram_plot(), krsa_violin_plot(), krsa_violin_plot_grouped(), krsa_waterfall(), krsa_zscores_plot()

Examples

TRUE

CogDisResLab/KRSA documentation built on Oct. 25, 2024, 9:17 a.m.