krsa_ce_output_peptides: It prepares a KRSA peptide file (log2 FC) to be used for...

In CogDisResLab/KRSA: KRSA: Kinome Random Sampling Analyzer

It prepares a KRSA peptide file (log2 FC) to be used for creedenzymatic

Description

Takes in the Z score table and output kinase with their scores

Usage

krsa_ce_output_peptides(peptide_table, metric, file_name)

Arguments

peptide_table	a df of the log2 FC scores of peptides
metric	which col to use as the score (totalMeanLFC, LFC, ... etc)
file_name	file name and path to save file as txt tab delimited file

Value

saved txt file to be used in creedenzymatic

See Also

Other helper functions: enrichr_lib_call(), krsa_ce_output_kinases(), krsa_enrichr(), krsa_extractEndPoint(), krsa_extractEndPointMaxExp(), krsa_get_diff(), krsa_get_diff_byChip(), krsa_sampling(), krsa_show_peptides(), krsa_top_hits()

CogDisResLab/KRSA documentation built on Sept. 27, 2024, 2:03 p.m.