Core-Bioinformatics/ClustAssess: Tools for Assessing Clustering

A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis.

Getting started

Package details

Bioconductor views ATACSeq Annotation Classification Clustering DifferentialExpression DimensionReduction GeneExpression Normalization Preprocessing QualityControl RNASeq SingleCell Software Visualization
Maintainer
LicenseMIT + file LICENSE
Version1.0.0
URL https://github.com/Core-Bioinformatics/ClustAssess https://core-bioinformatics.github.io/ClustAssess/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Core-Bioinformatics/ClustAssess")
Core-Bioinformatics/ClustAssess documentation built on Nov. 14, 2024, 6:33 p.m.