Files in CostaLab/MOJITOO
MOJITOO: (M)ulti-m(O)dal (J)oint (I)ntegra(T)ion of c(O)mp(O)nents
.gitignore
DESCRIPTION
NAMESPACE
R/CCA.R
R/RcppExports.R
R/consensus_nmf.R
R/generics.R
R/mcla.R
R/mojitoo.R
R/tools.R
R/util.R
R/viz.R
README.md
_pkgdown.yml
docs/404.html
docs/apple-touch-icon.png
docs/articles/ArchRObject_integration.html
docs/articles/ArchRObject_integration_files/figure-html/UMAP-1.png
docs/articles/Matrix_integration.html
docs/articles/SeuratObject_integration.html
docs/articles/SeuratObject_integration_files/figure-html/CCDimPlot-1.png
docs/articles/SeuratObject_integration_files/figure-html/CCHeatmap-1.png
docs/articles/SeuratObject_integration_files/figure-html/CCHeatmap-2.png
docs/articles/SeuratObject_integration_files/figure-html/CCTracks-1.png
docs/articles/SeuratObject_integration_files/figure-html/UMAPPlot-1.png
docs/articles/index.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.4.2/css/all.css
docs/deps/font-awesome-6.4.2/css/all.min.css
docs/deps/font-awesome-6.4.2/css/v4-shims.css
docs/deps/font-awesome-6.4.2/css/v4-shims.min.css
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/favicon-48x48.png
docs/favicon.ico
docs/favicon.svg
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/logo.png
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ATACTrack.Seurat.html
docs/reference/ATACTrack.html
docs/reference/CCA.html
docs/reference/ConsensusNMF.html
docs/reference/GeneCCDimPlot.html
docs/reference/GeneCCHeatmap.Seurat.html
docs/reference/MOJITOO-package.html
docs/reference/Rplot001.png
docs/reference/dot-CCbyGenes.ArchRProject.html
docs/reference/dot-CCbyGenes.Seurat.html
docs/reference/dot-CCbyGenes.html
docs/reference/dot-CCbyPeaks.ArchRProject.html
docs/reference/dot-CCbyPeaks.Seurat.html
docs/reference/dot-CCbyPeaks.html
docs/reference/dot-addMojitooAssay.ArchRProject.html
docs/reference/dot-addMojitooAssay.Seurat.html
docs/reference/dot-addMojitooAssay.html
docs/reference/figures/logo.png
docs/reference/getCellCol.html
docs/reference/getDimRed.html
docs/reference/getMatrix.html
docs/reference/index.html
docs/reference/install.pymetis.html
docs/reference/mojitoo.ArchRProject.html
docs/reference/mojitoo.html
docs/reference/mojitoo_Matrix.html
docs/reference/setCellCol.html
docs/reference/setDimRed.html
docs/reference/setMatrix.html
docs/search.json
docs/site.webmanifest
docs/sitemap.xml
docs/web-app-manifest-192x192.png
docs/web-app-manifest-512x512.png
inst/figures/LOGO.png
man/ATACTrack.Rd
man/ATACTrack.Seurat.Rd
man/CCA.Rd
man/ConsensusNMF.Rd
man/GeneCCDimPlot.Rd
man/GeneCCHeatmap.Seurat.Rd
man/MOJITOO-package.Rd
man/dot-CCbyGenes.ArchRProject.Rd
man/dot-CCbyGenes.Rd
man/dot-CCbyGenes.Seurat.Rd
man/dot-CCbyPeaks.ArchRProject.Rd
man/dot-CCbyPeaks.Rd
man/dot-CCbyPeaks.Seurat.Rd
man/dot-addMojitooAssay.ArchRProject.Rd
man/dot-addMojitooAssay.Rd
man/dot-addMojitooAssay.Seurat.Rd
man/figures/logo.png
man/getCellCol.Rd
man/getDimRed.Rd
man/getMatrix.Rd
man/install.pymetis.Rd
man/mojitoo.ArchRProject.Rd
man/mojitoo.Rd
man/setCellCol.Rd
man/setDimRed.Rd
man/setMatrix.Rd
pymojitoo/.gitignore
pymojitoo/README.md
pymojitoo/mojitoo/__init__.py
pymojitoo/mojitoo/core.py
pymojitoo/setup.py
src/.gitignore
src/RcppExports.cpp
src/nmf.cpp
vignettes/ArchRObject_integration.Rmd
vignettes/Matrix_integration.Rmd
vignettes/SeuratObject_integration.Rmd
