In CostaLab/MOJITOO: MOJITOO: (M)ulti-m(O)dal (J)oint (I)ntegra(T)ion of c(O)mp(O)nents

1. download data

```{bash, echo=FALSE} wget --no-check-certificate --no-verbose https://costalab.ukaachen.de/open_data/MOJITOO/ATAC_LSI.Rds wget --no-check-certificate --no-verbose https://costalab.ukaachen.de/open_data/MOJITOO/RNA_PCA.Rds

### 2. library
```r
library(MOJITOO)

3. LOADING DATA

RNA_PCA = readRDS("RNA_PCA.Rds")
ATAC_LSI = readRDS("ATAC_LSI.Rds")
(RNA_PCA[1:5, 1:5])
(ATAC_LSI[1:5, 1:5])
message("dims of pca & lsi: ", nrow(RNA_PCA), " ", ncol(RNA_PCA), ", ",
                               nrow(ATAC_LSI), " ", ncol(ATAC_LSI))

4. RUN MOJITOO

MOJITOO_DM <- mojitoo_Matrix(
     reduction_matrix.list= list(RNA_PCA, ATAC_LSI),
     dims.list = list(1:50, 2:50) ## exclude 1st dimension of LSI
)

MOJITOO_DM[1:5, 1:5]
message("dims of MOJITOO_DM: ", nrow(MOJITOO_DM), " ", ncol(MOJITOO_DM))

SessionInfo

sessionInfo()

CostaLab/MOJITOO documentation built on Oct. 28, 2024, 10:42 a.m.