Man pages for CshlSiepelLab/ACE
Analysis of CRISPR Essentiality in R
| callGetLLByGene | Function callGetLLByGene |
| callGetLLBySample | Function callGetLLBySample |
| DataObj | DataObjClass: R6 Environment Object for CRISPR Data |
| debugArgList | Function debugArgList |
| debugCpp | Function debugCpp |
| debugData | Function debugData |
| debugModel | Function debugModel |
| debugRes | Function debugRes |
| deriveSampleScaling | Function deriveSampleScaling create init_scaling and... |
| get95Int | Function get95Int |
| getFileIdx | Function getFileIdx |
| getGuideEfficiency | Function getGuideEfficiency |
| getLfcDt | getLfcDt: Function to retrieve average log fold change of... |
| getLL | Function getLL For experiments with master library, initial... |
| getLLNoInit | Function getLLNoInit For experiments without sequencing of... |
| getLLNoMaster | Function getLLNoMaster Version of getLL.cpp modified to... |
| getMasterLib | Function getMasterLib |
| get_nb_cpp | get_nb_cpp Get negative binomial probability density for... |
| get_norm_countVec | get_norm_countVec |
| get_pois_countVec | get_pois_countVec Get poisson probability density for... |
| get_pois_muVec | get_pois_muVec |
| ModelObj | ModelObj Environment |
| optFg | Function optFg: By-gene essentiality optimization. |
| optGuide | Function optGuide |
| optimizeModelParameters | Function optimizeModelParameters |
| optSample | Function optSample |
| removeNullData | Function removeNullData |
| ResultObj | Function ResultObjClass |
| writeResObj | Function writeResObj write results objects |
