getMasterLib: Function getMasterLib
In CshlSiepelLab/ACE: Analysis of CRISPR Essentiality in R
Description
Usage
Arguments
Value
Description
Process list of master libraries, which may be single or multiple files,
which may have one or more replicates.
Currently just averaging over total-count-normalized replicates.
Returns data.table of sgRNA x masterlibraries, with column names corresponding
to those referenced in sample_masterlib.
Usage
1
getMasterLib(countList, write_log)
Arguments
countList
List of data.tables with counts of sequenced masterlibraries.
One masterlibrary per data.table; all sequencing replicates within one data.table.
write_log
Function to output messages to log file.
Value
Data.table with sgrna x masterlibs of log frequencies.
CshlSiepelLab/ACE documentation built on Sept. 10, 2021, 11:21 p.m.
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Description Usage Arguments Value
Description
Process list of master libraries, which may be single or multiple files, which may have one or more replicates. Currently just averaging over total-count-normalized replicates. Returns data.table of sgRNA x masterlibraries, with column names corresponding to those referenced in sample_masterlib.
Usage
1 | getMasterLib(countList, write_log)
|
Arguments
countList |
List of data.tables with counts of sequenced masterlibraries. One masterlibrary per data.table; all sequencing replicates within one data.table. |
write_log |
Function to output messages to log file. |
Value
Data.table with sgrna x masterlibs of log frequencies.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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