callGetLLByGene: Function callGetLLByGene

In CshlSiepelLab/ACE: Analysis of CRISPR Essentiality in R

Description

Calls Rcpp functions to evaluate the likelihood of a single GENE parameter given sample and guide parameters. Assumes gene independence.

Usage

callGetLLByGene(
  geneEss,
  useGene,
  useSamples,
  sample_effects,
  guide_efficiency,
  user_DataObj,
  user_ModelObj
)

Arguments

geneEss	Double gene essentiality parameter.
useGene	String; name of gene to evaluate under given model parameters.
useSamples	Numeric vector; column indices of samples to evaluate.
sample_effects	Numeric vector of sample effects.
guide_efficiency	Numeric vector of guide efficiency parameters.
user_DataObj	DataObj class;
user_ModelObj	ModelObj class.

Value

returns log likelihood of given parameters, given data in parent ModelObjClass.

CshlSiepelLab/ACE documentation built on Sept. 10, 2021, 11:21 p.m.