mut_96_occurrences: Count 96 trinucleotide mutation occurrences
In CuppenResearch/MutationalPatterns: Comprehensive genome-wide analysis of mutational processes
View source: R/mut_96_occurrences.R
mut_96_occurrences R Documentation
Count 96 trinucleotide mutation occurrences
Description
@details
This function is called by mut_matrix. It calculates the 96 trinucleotide context for all variants
and then splits these per GRanges (samples). It then calculates how often each 96 trinucleotide context occurs.
Usage
mut_96_occurrences(type_context, gr_sizes)
Arguments
type_context
result from type_context function
gr_sizes
A vector indicating the number of variants per GRanges
Value
Mutation matrix with 96 trinucleotide mutation occurrences
CuppenResearch/MutationalPatterns documentation built on Nov. 23, 2022, 4:13 a.m.
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View source: R/mut_96_occurrences.R
| mut_96_occurrences | R Documentation |
Count 96 trinucleotide mutation occurrences
Description
@details This function is called by mut_matrix. It calculates the 96 trinucleotide context for all variants and then splits these per GRanges (samples). It then calculates how often each 96 trinucleotide context occurs.
Usage
mut_96_occurrences(type_context, gr_sizes)
Arguments
type_context |
result from type_context function |
gr_sizes |
A vector indicating the number of variants per GRanges |
Value
Mutation matrix with 96 trinucleotide mutation occurrences
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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