plot_dbs_contexts: Plot the DBS contexts

In CuppenResearch/MutationalPatterns: Comprehensive genome-wide analysis of mutational processes

Plot the DBS contexts

Description

Plot the DBS contexts

Usage

plot_dbs_contexts(counts, same_y = FALSE, condensed = FALSE)

Arguments

counts	A tibble containing the number of DBS per COSMIC context.
same_y	A boolean describing whether the same y axis should be used for all samples.
condensed	More condensed plotting format. Default = F.

Details

Plots the number of DBS COSMIC context per sample. It takes a tibble with counts as its input. This tibble can be generated by count_dbs_contexts Each sample is plotted in a separate facet. The same y axis can be used for all samples or a separate y axis can be used.

Value

A ggplot figure.

See Also

count_dbs_contexts, plot_main_dbs_contexts

Other DBS: count_dbs_contexts(), get_dbs_context(), plot_compare_dbs(), plot_main_dbs_contexts()

Examples

## Get The DBS counts
## See 'count_dbs_contexts()' for more info on how to do this.
dbs_counts <- readRDS(system.file("states/blood_dbs_counts.rds",
  package = "MutationalPatterns"
))

## Plot contexts
plot_dbs_contexts(dbs_counts)

## Use the same y axis for all samples.
plot_dbs_contexts(dbs_counts, same_y = TRUE)

## Create a more condensed plot
plot_dbs_contexts(dbs_counts, condensed = TRUE)

CuppenResearch/MutationalPatterns documentation built on Nov. 23, 2022, 4:13 a.m.