API for CuppenResearch/MutationalPatterns
Comprehensive genome-wide analysis of mutational processes

Global functions
MutationalPatterns Man page
MutationalPatterns-package Man page
binomial_test Man page Source code
cluster_signatures Man page Source code
cos_sim Man page Source code
cos_sim_matrix Man page Source code
enrichment_depletion_test Man page Source code
explained_by_signatures Man page Source code
extract_signatures Man page Source code
fit_to_signatures Man page Source code
genomic_distribution Man page Source code
intersect_with_region Source code
mut_192_occurrences Source code
mut_96_occurrences Source code
mut_context Man page Source code
mut_matrix Man page Source code
mut_matrix_stranded Man page Source code
mut_strand Man page Source code
mut_type Man page Source code
mut_type_occurrences Man page Source code
mutation_context Man page Source code
mutation_types Man page Source code
mutations_from_vcf Man page Source code
plot_192_profile Man page Source code
plot_96_profile Man page Source code
plot_compare_profiles Man page Source code
plot_contribution Man page Source code
plot_contribution_heatmap Man page Source code
plot_cosine_heatmap Man page Source code
plot_enrichment_depletion Man page Source code
plot_rainfall Man page Source code
plot_signature_strand_bias Man page Source code
plot_spectrum Man page Source code
plot_strand Man page Source code
plot_strand_bias Man page Source code
read_vcfs_as_granges Man page Source code
strand_bias_test Man page Source code
strand_from_vcf Man page Source code
strand_occurrences Man page Source code
type_context Man page Source code
CuppenResearch/MutationalPatterns documentation built on May 4, 2018, 3:46 a.m.