plot_river | R Documentation |
Function to plot a SNV mutation matrix as a riverplot. This is especially useful when looking at a wide mutational context
plot_river(mut_matrix, condensed = FALSE)
mut_matrix |
Matrix containing mutation counts. |
condensed |
More condensed plotting format. Default = F. |
A ggplot object
mut_matrix
,
plot_96_profile
,
plot_profile_heatmap
## See the 'mut_matrix()' examples for how we obtained the ## mutation matrix information: ## Get regular matrix mut_mat <- readRDS(system.file("states/mut_mat_data.rds", package = "MutationalPatterns" )) ## Create heatmap of profile plot_river(mut_mat[,c(1,4)]) ## Get extended matrix mut_mat_extended <- readRDS(system.file("states/mut_mat_data_extended.rds", package = "MutationalPatterns" )) ## Create heatmap of extended profile plot_river(mut_mat_extended[,c(1,4)]) ## Create condensed version of riverplot plot_river(mut_mat_extended[,c(1,4)], condensed = TRUE)
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