Man pages for Czh3/iSpatial
infer transcriptome-wide spatial expression via integration of scRNA and spRNA
| cluster_spatial_expr_pattern | Cluster spatial expression features |
| cross_validation | 10 fold cross validation |
| get_spatial_features | Get spatial expression features |
| get_spatial_features_image | get spatial expression features in each image |
| infer | Main function of iSpatial |
| infer_harmony | function of iSpatial |
| infer_rPCA | function of iSpatial integrated used rPCA |
| infer_v2 | Main function of iSpatial |
| intergrate | 2 round intergrated in iSpatial |
| NA_merFISH | merFISH of mouse nucleus accumbens |
| NA_scRNA | scRNA-seq (10x platform) of mouse nucleus accumbens |
| recommend_k | function of iSpatial |
| run_harmony | run harmony integration |
| sample_region | Random sample spatial regions |
| sparse.cor | calculate correlation |
| spatial_cor | Calculate spatially expression correlation |
| spatial_signature_plot | Plot spatial expression |
| spatial_var_gene_slice | Find spatial variable genes |
| spatial_variable_genes | Find spatial variable genes |
| stabilize_expr | stabilize expression |
