run_harmony: run harmony integration
In Czh3/iSpatial: infer transcriptome-wide spatial expression via integration of scRNA and spRNA
run_harmony R Documentation
run harmony integration
Description
This function calls harmony package(https://github.com/immunogenomics/harmony)
to integrate the scRNA-seq and spatial transcriptome data.
Usage
run_harmony(seurat_obj, genes_select, npc = 20)
Arguments
seurat_obj
merged seurat object
genes_select
genes used to integration, usually targeted genes.
npc
number of PC
Value
seurat object
Czh3/iSpatial documentation built on Sept. 15, 2022, 10:32 p.m.
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| run_harmony | R Documentation |
run harmony integration
Description
This function calls harmony package(https://github.com/immunogenomics/harmony) to integrate the scRNA-seq and spatial transcriptome data.
Usage
run_harmony(seurat_obj, genes_select, npc = 20)
Arguments
seurat_obj |
merged seurat object |
genes_select |
genes used to integration, usually targeted genes. |
npc |
number of PC |
Value
seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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