stabilize_expr: stabilize expression
In Czh3/iSpatial: infer transcriptome-wide spatial expression via integration of scRNA and spRNA
stabilize_expr R Documentation
stabilize expression
Description
This function use nearest neighbor to correct the expression.
This could remove some False Positive / False negative expressions.
This function corrects "RNA" assay "data" slot.
Usage
stabilize_expr(obj, neighbor = 5, npcs = 8, weight.NN = 0.2, n.core = 10)
Arguments
obj
seurat object
neighbor
number of nearest neighbors used to correct
npcs
number of principal component (PC) used to RunPCA
weight.NN
the weight of cell itself
n.core
number of CPU cores used to parallel
Value
seurat object with corrected expression
Czh3/iSpatial documentation built on Sept. 15, 2022, 10:32 p.m.
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| stabilize_expr | R Documentation |
stabilize expression
Description
This function use nearest neighbor to correct the expression. This could remove some False Positive / False negative expressions. This function corrects "RNA" assay "data" slot.
Usage
stabilize_expr(obj, neighbor = 5, npcs = 8, weight.NN = 0.2, n.core = 10)
Arguments
obj |
seurat object |
neighbor |
number of nearest neighbors used to correct |
npcs |
number of principal component (PC) used to RunPCA |
weight.NN |
the weight of cell itself |
n.core |
number of CPU cores used to parallel |
Value
seurat object with corrected expression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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