spatial_var_gene_slice: Find spatial variable genes
In Czh3/iSpatial: infer transcriptome-wide spatial expression via integration of scRNA and spRNA
View source: R/spatial_variable_gene.R
spatial_var_gene_slice R Documentation
Find spatial variable genes
Description
Find spatial variable genes
Usage
spatial_var_gene_slice(obj, assay, img, bin, test.use = "wilcox", n.core = 1)
Arguments
obj
seurat object
assay
select assay
img
select image
bin
number of bins used to segregate the image
test.use
which test to use. Available options are:
"ks": Kolmogorov-Smirnov Tests
"wilcox": Wilcoxon Rank Sum and Signed Rank Tests
n.core
number of CPU cores used
Value
return a matrix wtih spatial variable genes
Czh3/iSpatial documentation built on Sept. 15, 2022, 10:32 p.m.
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View source: R/spatial_variable_gene.R
| spatial_var_gene_slice | R Documentation |
Find spatial variable genes
Description
Find spatial variable genes
Usage
spatial_var_gene_slice(obj, assay, img, bin, test.use = "wilcox", n.core = 1)
Arguments
obj |
seurat object |
assay |
select assay |
img |
select image |
bin |
number of bins used to segregate the image |
test.use |
which test to use. Available options are: "ks": Kolmogorov-Smirnov Tests "wilcox": Wilcoxon Rank Sum and Signed Rank Tests |
n.core |
number of CPU cores used |
Value
return a matrix wtih spatial variable genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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