SNPmatrix: Construct a SNP matrix.
In DKMS-LSL/dr2s: Dual redundant reference sequencing
Description
Usage
Arguments
Value
Examples
Description
Construct a SNP matrix.
Usage
1
SNPmatrix(bamfile, polymorphicPositions)
Arguments
bamfile
A BAM file
polymorphicPositions
SNP positions.
refseq
Reference sequence as DNAString
Value
A [read x position] matrix.
Examples
1
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DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.
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Description Usage Arguments Value Examples
Description
Construct a SNP matrix.
Usage
1 | SNPmatrix(bamfile, polymorphicPositions)
|
Arguments
bamfile |
A BAM file |
polymorphicPositions |
SNP positions. |
refseq |
Reference sequence as DNAString |
Value
A [read x position] matrix.
Examples
1 | ##
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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