scoreHighestSR: Get the highest scoring haplotype for each read
In DKMS-LSL/dr2s: Dual redundant reference sequencing
Description
Usage
Arguments
Details
Value
Examples
View source: R/partitionShortreads.R
Description
Get the highest scoring haplotype for each read
Usage
1
scoreHighestSR(srpartition, diffThreshold = 0.001, ...)
Arguments
srpartition
srpartition dataframe with scores per read and haplotype.
diffThreshold
report reads which scores differ only
below threshold to both haplotypes. Iteratively increases diffThreshold until
all positions differ below threshold.
Details
Returns a data.frame object with columns:
- read
<character>; The read name
- Haplotype
<character>; Haplotype
Value
A data.frame object. See Details.
Examples
1
### Score
DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.
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Description Usage Arguments Details Value Examples
View source: R/partitionShortreads.R
Description
Get the highest scoring haplotype for each read
Usage
1 | scoreHighestSR(srpartition, diffThreshold = 0.001, ...)
|
Arguments
srpartition |
srpartition dataframe with scores per read and haplotype. |
diffThreshold |
report reads which scores differ only below threshold to both haplotypes. Iteratively increases diffThreshold until all positions differ below threshold. |
Details
Returns a data.frame object with columns:
- read
<character>; The read name
- Haplotype
<character>; Haplotype
Value
A data.frame object. See Details.
Examples
1 | ### Score
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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