Description Usage Arguments Value
Subsample a bam file according to coverage
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bamfile |
The bamfile that will be subsampled |
windowSize |
The window size for subsampling. The number of reads precised by sampleSize argument will be sampled in this window. |
sampleSize |
The desired new coverage of the bamfile. |
what |
What to extract from the bam file to write to the new one.
If NULL defaults to the complete output of
|
A list containing the filename of the original bamfile, the name of the new bamfile, the reference length and the sampleSize
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