rownames: sequence names

In Danis102/seqpac: Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts

sequence names

Description

sequence names

sequences in reanno

Usage

## S4 method for signature 'PAC'
rownames(x)

## S4 method for signature 'reanno'
rownames(x)

Arguments

x	A S4 object of class PAC.

Value

The sequences (row names) held by the Counts/Anno tables of a PAC-object.

Sequences in the reanno-object.

Examples

load(system.file("extdata", "drosophila_sRNA_pac_filt_anno.Rdata", 
                  package = "seqpac", mustWork = TRUE))

# extra fuctionality with s4 PAC-object:
names(pac)
length(pac)
nrow(pac)
ncol(pac)
rownames(pac)
colnames(pac)
pheno(pac) 
head(anno(pac))
head(counts(pac))
head(norm(pac)$cpm)

Danis102/seqpac documentation built on Aug. 26, 2023, 10:15 a.m.