| calcBounds |
Source code
|
| calcBoundsMulti |
Source code
|
| calcBoundsUnknownDir |
Source code
|
| calcBoundsUnknownDirMulti |
Source code
|
| calcScores |
Source code
|
| calcScoresUpDn |
Source code
|
| checkGeneSetList |
Source code
|
| checkGenesMulti |
Source code
|
| emptyScoreDf |
Source code
|
| generateNull |
Man page
|
| generateNull,GeneSet,ANY-method |
Man page
|
| generateNull,GeneSet,GeneSet-method |
Man page
|
| generateNull,vector,ANY-method |
Man page
|
| generateNull,vector,vector-method |
Man page
|
| generateNull_intl |
Man page
Source code
|
| getColorScale |
Source code
|
| getPvals |
Man page
Source code
|
| getStableGenes |
Man page
Source code
|
| getTheme |
Source code
|
| isScoreCol |
Source code
|
| multiScore |
Man page
|
| multiScore,matrix,GeneSetCollection,GeneSetCollection-method |
Man page
|
| multiScore,matrix,GeneSetCollection,missing-method |
Man page
|
| multiScore,matrix,list,list-method |
Man page
|
| multiScore,matrix,list,missing-method |
Man page
|
| plotDispersion |
Man page
Source code
|
| plotNull |
Man page
Source code
|
| plotRankDensity |
Man page
|
| plotRankDensity,ANY,GeneSet,GeneSet-method |
Man page
|
| plotRankDensity,ANY,GeneSet,missing-method |
Man page
|
| plotRankDensity,ANY,vector,missing-method |
Man page
|
| plotRankDensity,ANY,vector,vector-method |
Man page
|
| plotRankDensity_intl |
Man page
|
| plotScoreLandscape |
Man page
Source code
|
| processAnnotation |
Source code
|
| projectScoreLandscape |
Man page
Source code
|
| rankExpr |
Source code
|
| rankExprStable |
Source code
|
| rankGenes |
Man page
|
| rankGenes,DGEList-method |
Man page
|
| rankGenes,ExpressionSet-method |
Man page
|
| rankGenes,SummarizedExperiment-method |
Man page
|
| rankGenes,data.frame-method |
Man page
|
| rankGenes,matrix-method |
Man page
|
| scoredf_ccle_epi |
Man page
|
| scoredf_ccle_mes |
Man page
|
| scoredf_tcga_epi |
Man page
|
| scoredf_tcga_mes |
Man page
|
| simpleScore |
Man page
|
| simpleScore,matrix,GeneSet,GeneSet-method |
Man page
|
| simpleScore,matrix,GeneSet,missing-method |
Man page
|
| simpleScore,matrix,vector,missing-method |
Man page
|
| simpleScore,matrix,vector,vector-method |
Man page
|
| singscore |
Man page
|
| tgfb_expr_10_se |
Man page
|
| tgfb_gs_dn |
Man page
|
| tgfb_gs_up |
Man page
|
| toy_expr_se |
Man page
|
| toy_gs_dn |
Man page
|
| toy_gs_up |
Man page
|
