tgfb_gs_up: Gene set of up-regulated genes for the TGFb-induced EMT gene...

In DavisLaboratory/singscore: Rank-based single-sample gene set scoring method

Gene set of up-regulated genes for the TGFb-induced EMT gene signature

Description

A GeneSet object that contains the up-regulated genes of the TGFb-induced EMT gene signature that was derived by (Foroutan et al.,2017), using two meta-analysis techniques. The gene signature contains an up-regulated gene set (up-set) and a down-regulated gene set (down-set). Please refer to the vignettes for the steps to acquire the exact data object.

Usage

tgfb_gs_up

Format

A GeneSet object

Source

Foroutan et al,2017

References

Foroutan, Momeneh, Joseph Cursons, Soroor Hediyeh-Zadeh, Erik W Thompson, and Melissa J Davis. 2017. “A Transcriptional Program for Detecting Tgfbeta-Induced Emt in Cancer.” Molecular Cancer Research. American Association for Cancer Research. doi:10.1158/1541-7786.MCR-16-0313.

See Also

"GeneSet",tgfb_gs_dn

DavisLaboratory/singscore documentation built on Nov. 21, 2024, 8:17 a.m.