plotRankDensity_intl: Plot the densities of ranks for one sample

In DavisLaboratory/singscore: Rank-based single-sample gene set scoring method

Plot the densities of ranks for one sample

Description

This function takes a single column data frame, which is a subset of the ranked data obtained from rankGenes()function and gene sets, and it returns plots visualising the density and the rugs of the ran ks.

Usage

plotRankDensity_intl(
  rankData,
  upSet,
  downSet = NULL,
  isInteractive = FALSE,
  textSize = 1.2
)

Arguments

rankData	one column of the ranked gene expression matrix obtained from the rankGenes() function, use drop = FALSE when subsetting the ranked gene expression matrix, see examples.
upSet	GeneSet object, up regulated gene set
downSet	GeneSet object, down regulated gene set
isInteractive	Boolean, determin whether the returned plot is interactive
textSize	numeric, set the size of text on the plot

Value

A ggplot object (optionally interactive) demonstrating the rank density along with rug plot

See Also

"GeneSet"

DavisLaboratory/singscore documentation built on July 5, 2023, 9:58 a.m.