toy_expr_se: A toy gene expression dataset of two samples
In DavisLaboratory/singscore: Rank-based single-sample gene set scoring method
toy_expr_se R Documentation
A toy gene expression dataset of two samples
Description
A toy dataset consisting of 2 samples with the expression values of 20 genes.
The data was created by sampling 2 samples and 20 genes from the dataset by
Foroutan et al, 2017.
Usage
toy_expr_se
Format
A SummarizedExperiment of 2 samples each with 20 genes
- D_Ctrl_R1
a control sample
- D_TGFb_R1
a TGFb-treated sample
Source
References
Foroutan, Momeneh, Joseph Cursons, Soroor Hediyeh-Zadeh, Erik W
Thompson, and Melissa J Davis. 2017. “A Transcriptional Program for
Detecting Tgfbeta-Induced Emt in Cancer.” Molecular Cancer Research.
American Association for Cancer Research.
doi:10.1158/1541-7786.MCR-16-0313.
DavisLaboratory/singscore documentation built on Nov. 21, 2024, 8:17 a.m.
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| toy_expr_se | R Documentation |
A toy gene expression dataset of two samples
Description
A toy dataset consisting of 2 samples with the expression values of 20 genes. The data was created by sampling 2 samples and 20 genes from the dataset by Foroutan et al, 2017.
Usage
toy_expr_se
Format
A SummarizedExperiment of 2 samples each with 20 genes
- D_Ctrl_R1
a control sample
- D_TGFb_R1
a TGFb-treated sample
Source
References
Foroutan, Momeneh, Joseph Cursons, Soroor Hediyeh-Zadeh, Erik W Thompson, and Melissa J Davis. 2017. “A Transcriptional Program for Detecting Tgfbeta-Induced Emt in Cancer.” Molecular Cancer Research. American Association for Cancer Research. doi:10.1158/1541-7786.MCR-16-0313.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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