getStableGenes: Get a list of stably expressed genes

In DavisLaboratory/singscore: Rank-based single-sample gene set scoring method

Get a list of stably expressed genes

Description

Get a list of genes that are stably expressed in cancer and normal solid tissue.

Usage

getStableGenes(
  n_stable,
  type = c("carcinoma", "blood", "protein"),
  id = c("geneid", "ensembl")
)

Arguments

n_stable	numeric, number of stable genes to retrieve
type	character, type of stable genes requested, stable genes in "carcinoma" or stable genes in "blood"
id	character, gene identifier required. This can be either "geneid" for symbols or "ensembl" ensembl id)

Value

a character vector with gene IDs sorted by their expected expression levels in the requested tissue

Examples

getStableGenes(5)
getStableGenes(5, id = 'ensembl')
getStableGenes(5, type = 'blood')

DavisLaboratory/singscore documentation built on Nov. 21, 2024, 8:17 a.m.