scoredf_tcga_epi: Pre-computed scores of the TCGA breast cancer gene expression...
In DavisLaboratory/singscore: Rank-based single-sample gene set scoring method
scoredf_tcga_epi R Documentation
Pre-computed scores of the TCGA breast cancer gene expression matrix
against an epithelial signature
Description
This data.frame stores pre-computed scores of the
TCGA dataset calculated using the
simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al.
Please refer to the vignettes for instructions on how to obtain the full
datasets.
Usage
scoredf_tcga_epi
Format
An object of class data.frame with 1119 rows and 2 columns.
References
Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi
Mori, Ruby Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD.
“Epithelial-Mesenchymal Transition Spectrum Quantification and Its Efficacy
in Deciphering Survival and Drug Responses of Cancer Patients.” EMBO
Molecular Medicine 6 (10). Oxford, UK: BlackWell Publishing Ltd: 1279–93
doi:10.15252/emmm.201404208.
See Also
scoredf_tcga_mes
DavisLaboratory/singscore documentation built on Nov. 21, 2024, 8:17 a.m.
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| scoredf_tcga_epi | R Documentation |
Pre-computed scores of the TCGA breast cancer gene expression matrix against an epithelial signature
Description
This data.frame stores pre-computed scores of the
TCGA dataset calculated using the
simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al.
Please refer to the vignettes for instructions on how to obtain the full
datasets.
Usage
scoredf_tcga_epi
Format
An object of class data.frame with 1119 rows and 2 columns.
References
Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi Mori, Ruby Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD. “Epithelial-Mesenchymal Transition Spectrum Quantification and Its Efficacy in Deciphering Survival and Drug Responses of Cancer Patients.” EMBO Molecular Medicine 6 (10). Oxford, UK: BlackWell Publishing Ltd: 1279–93 doi:10.15252/emmm.201404208.
See Also
scoredf_tcga_mes
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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