CoRe.download_AnnotationModel: Download Cell Passport models annotation file

View source: R/CoRe.R

CoRe.download_AnnotationModelR Documentation

Download Cell Passport models annotation file

Description

Downloading Cell Model Passport annotation file [1].

Usage

CoRe.download_AnnotationModel(
URL='https://cog.sanger.ac.uk/cmp/download/model_list_latest.csv.gz')

Arguments

URL

The URL specifying the online location of the annotation file. Default value points to the most up-to-date version of the Cell Model Passports annotation file (which is kept updated).

Value

A data frame with one row per model and one colum per annotation entry.

Author(s)

C. Pacini, E. Karakoc, A. Vinceti & F. Iorio

References

[1] Van der Meer D, Barthorpe S, Yang W, et al. Cell Model Passports-a hub for clinical, genetic and functional datasets of preclinical cancer models. Nucleic Acids Res. 2019;47(D1):D923–D929.

Examples

## Downloading Cell Model Passport annotation file
modelAnn<-CoRe.download_AnnotationModel()

head(modelAnn)

DepMap-Analytics/CoRe documentation built on July 6, 2022, 8:01 a.m.