CoRe.download_AnnotationModel: Download Cell Passport models annotation file
In DepMap-Analytics/CoRe: CoRe R package
CoRe.download_AnnotationModel R Documentation
Download Cell Passport models annotation file
Description
Downloading Cell Model Passport annotation file [1].
Usage
CoRe.download_AnnotationModel(
URL='https://cog.sanger.ac.uk/cmp/download/model_list_latest.csv.gz')
Arguments
URL
The URL specifying the online location of the annotation file. Default value points to the most up-to-date version of the Cell Model Passports annotation file (which is kept updated).
Value
A data frame with one row per model and one colum per annotation entry.
Author(s)
C. Pacini, E. Karakoc, A. Vinceti & F. Iorio
References
[1] Van der Meer D, Barthorpe S, Yang W, et al. Cell Model Passports-a hub for clinical, genetic and functional datasets of preclinical cancer models. Nucleic Acids Res. 2019;47(D1):D923–D929.
Examples
## Downloading Cell Model Passport annotation file
modelAnn<-CoRe.download_AnnotationModel()
head(modelAnn)
DepMap-Analytics/CoRe documentation built on July 6, 2022, 8:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| CoRe.download_AnnotationModel | R Documentation |
Download Cell Passport models annotation file
Description
Downloading Cell Model Passport annotation file [1].
Usage
CoRe.download_AnnotationModel( URL='https://cog.sanger.ac.uk/cmp/download/model_list_latest.csv.gz')
Arguments
URL |
The URL specifying the online location of the annotation file. Default value points to the most up-to-date version of the Cell Model Passports annotation file (which is kept updated). |
Value
A data frame with one row per model and one colum per annotation entry.
Author(s)
C. Pacini, E. Karakoc, A. Vinceti & F. Iorio
References
[1] Van der Meer D, Barthorpe S, Yang W, et al. Cell Model Passports-a hub for clinical, genetic and functional datasets of preclinical cancer models. Nucleic Acids Res. 2019;47(D1):D923–D929.
Examples
## Downloading Cell Model Passport annotation file modelAnn<-CoRe.download_AnnotationModel() head(modelAnn)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.