curated_BAGEL_nonEssential: Curated Reference Core fitness essential genes
In DepMap-Analytics/CoRe: CoRe R package
curated_BAGEL_nonEssential R Documentation
Curated Reference Core fitness essential genes
Description
A list of reference core fitness essential genes assembled from multiple RNAi studies used as classification template
by the BAGEL algorithm to call gene depletion significance [1] and filtered as shown in [2].
Usage
data(curated_BAGEL_nonEssential)
Format
A vector of strings containing HGNC symbols of curated reference core fitness essential genes.
References
[1] BAGEL: a computational framework for identifying essential genes from pooled library screens. Traver Hart and Jason Moffat. BMC Bioinformatics, 2016 vol. 17 p. 164.
[2] Behan, F.M., Iorio, F., Picco, G. et al. Prioritization of cancer therapeutic targets using CRISPR–Cas9 screens. Nature 568, 511–516 (2019).
See Also
curated_BAGEL_essential
Examples
data(curated_BAGEL_nonEssential)
head(curated_BAGEL_nonEssential)
DepMap-Analytics/CoRe documentation built on July 6, 2022, 8:01 a.m.
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| curated_BAGEL_nonEssential | R Documentation |
Curated Reference Core fitness essential genes
Description
A list of reference core fitness essential genes assembled from multiple RNAi studies used as classification template by the BAGEL algorithm to call gene depletion significance [1] and filtered as shown in [2].
Usage
data(curated_BAGEL_nonEssential)
Format
A vector of strings containing HGNC symbols of curated reference core fitness essential genes.
References
[1] BAGEL: a computational framework for identifying essential genes from pooled library screens. Traver Hart and Jason Moffat. BMC Bioinformatics, 2016 vol. 17 p. 164.
[2] Behan, F.M., Iorio, F., Picco, G. et al. Prioritization of cancer therapeutic targets using CRISPR–Cas9 screens. Nature 568, 511–516 (2019).
See Also
curated_BAGEL_essential
Examples
data(curated_BAGEL_nonEssential) head(curated_BAGEL_nonEssential)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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