Files in ETHZ-INS/epiwraps
epiwraps: Wrappers for plotting and dealing with epigenomics data
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ESE.R
R/annotateRegions.R
R/bam2bw.R
R/bamChrChunkApply.R
R/callPeaks.R
R/data.R
R/estimateFragSize.R
R/getCounts.R
R/misc.R
R/motifs.R
R/normalization.R
R/overlaps.R
R/plotEnrichedHeatmaps.R
R/qc.R
R/reduceWithResplit.R
R/refragment.R
R/resizeMatrix.R
R/signal2Matrix.R
R/signalMatrices.R
R/singleRegion.R
R/tabixChrChunkApply.R
README.md
_pkgdown.yml
data/exampleDNAme.RData
data/exampleESE.RData
inst/extdata/example_atac.bw
inst/extdata/example_peaks.bed
inst/extdata/example_rna.bw
man/TSSenrichment.Rd
man/addAssayToESE.Rd
man/annotateRegions.Rd
man/bam2bw.Rd
man/bamChrChunkApply.Rd
man/breakStrings.Rd
man/callPeaks.Rd
man/clusterSignalMatrices.Rd
man/estimateFragSize.Rd
man/exampleDNAme.Rd
man/exampleESE.Rd
man/formatGenomicDist.Rd
man/frag2bw.Rd
man/fragSizesDist.Rd
man/getCounts.Rd
man/getCovStats.Rd
man/getEmpiricalFDR.Rd
man/getNormFactors.Rd
man/getSignalMatrices.Rd
man/importBedlike.Rd
man/inject.Rd
man/meltSignals.Rd
man/mergeSignalMatrices.Rd
man/ml2ESE.Rd
man/motifFootprint.Rd
man/plotCorFromCovStats.Rd
man/plotCovStats.Rd
man/plotEnrichedHeatmaps.Rd
man/plotSignalTracks.Rd
man/reduceWithResplit.Rd
man/refragment.Rd
man/regionCAT.Rd
man/regionOverlaps.Rd
man/regionUpset.Rd
man/renormalizeSignalMatrices.Rd
man/resizeMatrix.Rd
man/showTrackInfo.Rd
man/signal2Matrix.Rd
man/signalsAcrossSamples.Rd
man/tabixChrApply.Rd
man/tileRle.Rd
man/views2Matrix.Rd
readme_files/figure-html/aggPlot-1.png
readme_files/figure-html/heatmap1-1.png
readme_files/figure-html/heatmap1-2.png
readme_files/figure-html/heatmapTrim-1.png
readme_files/figure-html/signal1-1.png
readme_files/figure-html/signal1-2.png
readme_files/figure-html/signal2-1.png
readme_files/figure-html/signal3-1.png
readme_files/figure-html/signalAlignments-1.png
vignettes/TracksWithTranscripts.png
vignettes/bam2bw.Rmd
vignettes/example_bigwigs_hm.png
vignettes/misc.Rmd
vignettes/multiRegionPlot.Rmd
vignettes/normalization.Rmd
vignettes/singleRegionPlot.Rmd
