getEmpiricalFDR: getEmpiricalFDR
In ETHZ-INS/epiwraps: epiwraps: Wrappers for plotting and dealing with epigenomics data
getEmpiricalFDR R Documentation
getEmpiricalFDR
Description
Computes the FDR as the proportion of negative peaks with a more extreme
p-value, eventually extrapolating and preserving the ranking.
Usage
getEmpiricalFDR(log10p, pneg, n = length(log10p) * 10)
Arguments
log10p
-log10 p-values of candidate peaks
pneg
-log10 p-values of negative peaks
n
The number of hypotheses (used when the empirical FDR is zero)
Value
A data.frame with the empirical FDR and a smoothed -log10(FDR)
ETHZ-INS/epiwraps documentation built on Dec. 22, 2024, 4:05 a.m.
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| getEmpiricalFDR | R Documentation |
getEmpiricalFDR
Description
Computes the FDR as the proportion of negative peaks with a more extreme p-value, eventually extrapolating and preserving the ranking.
Usage
getEmpiricalFDR(log10p, pneg, n = length(log10p) * 10)
Arguments
log10p |
-log10 p-values of candidate peaks |
pneg |
-log10 p-values of negative peaks |
n |
The number of hypotheses (used when the empirical FDR is zero) |
Value
A data.frame with the empirical FDR and a smoothed -log10(FDR)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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