calcResiduals: calcResiduals

In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

Subtitle

Usage

calcResiduals(
  singlets,
  multiplets,
  swarm,
  include = NULL,
  fractions = NULL,
  ...
)

Arguments

singlets	A CIMseqSinglets object.
multiplets	A CIMseqMultiplets object.
swarm	A CIMseqSwarm object.
include	character; If residuals should only be calculated for a subset of the multiplets, include their names here. Default is to calculate for all multiplets.
fractions	matrix; A matrix of fractions. By default the fractions in the CIMseqSwarm object are used.
...	additional arguments to pass on

Details

Calculates the residuals for each gene and multiplet after deconvolution based on the spSwarm results.

Value

Residuals (add more description).

Author(s)

Jason T. Serviss

EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.